From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Fri, 4 Jan 2013 10:53:03 +0000 (+0000)
Subject: fixed to_i bug in pcr_seq
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=7747e486d3339b1fe256513274ca697224aea96a

fixed to_i bug in pcr_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2057 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/pcr_seq b/bp_bin/pcr_seq
index 8700276..5cee30b 100755
--- a/bp_bin/pcr_seq
+++ b/bp_bin/pcr_seq
@@ -195,8 +195,8 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
         record[:TYPE]     = File.basename(outfile).sub(".fna", "").upcase
         record[:SEQ_NAME].match(/(.+):\[(\d+),(\d+)\]$/)
         record[:SEQ_NAME] = $1
-        record[:PCR_BEG]  = $2
-        record[:PCR_END]  = $3
+        record[:PCR_BEG]  = $2.to_i
+        record[:PCR_END]  = $3.to_i
 
         if record[:PCR_BEG] > record[:PCR_END]
           record[:PCR_BEG], record[:PCR_END] = record[:PCR_END], record[:PCR_BEG]