From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Thu, 5 Dec 2013 14:07:59 +0000 (+0000)
Subject: fixed qual scores in sam.rb
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=27a34d675d07468851f2076a62ca2b8dbefb5923

fixed qual scores in sam.rb

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2274 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index 8772e63..cf5acda 100644
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -76,7 +76,7 @@ class Sam < Filesys
     bp[:SEQ]      = sam[:SEQ].seq
 
     unless sam[:SEQ].qual.nil?
-      bp[:SCORES] = sam[:SEQ].qual_convert!(:base_33, :base_64).qual
+      bp[:SCORES] = sam[:SEQ].qual
     end
 
     if sam[:NM] and sam[:NM].to_i > 0