fixed minor upcase bug in assemble.rb

[biopieces.git] / code_ruby / lib / maasha / seq / assemble.rb

diff --git a/code_ruby/lib/maasha/seq/assemble.rb b/code_ruby/lib/maasha/seq/assemble.rb
index dffbf11ee43f25b1fcf684d72c86d7a95ead62f4..7b02d03a61a827782a802ade399ebd5c378105cb 100644 (file)
--- a/code_ruby/lib/maasha/seq/assemble.rb
+++ b/code_ruby/lib/maasha/seq/assemble.rb
@@ -64,6 +64,8 @@ class Assemble
           entry_overlap = @entry1[-1 * overlap .. -1]
         end
 
+        entry_left.seq.upcase!
+        entry_right.seq.upcase!
         entry_merged          = entry_left + entry_overlap + entry_right
         entry_merged.seq_name = @entry1.seq_name + ":overlap=#{overlap}:hamming=#{hamming_dist}"