changed Seq.new argument to hash

[biopieces.git] / code_ruby / lib / maasha / sam.rb

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index 074b999aa58589ea962356655c7f3262ab3b05a3..14a910ffd4a46e7cef036a290da040abf0f632b7 100644 (file)
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -393,7 +393,7 @@ class Sam < Filesys
     entry[:RNEXT] = rnext
     entry[:PNEXT] = pnext
     entry[:TLEN]  = tlen
-    entry[:SEQ]   = (qual == '*') ? Seq.new(qname, seq) : Seq.new(qname, seq, qual)
+    entry[:SEQ]   = (qual == '*') ? Seq.new(seq_name: qname, seq: seq) : Seq.new(seq_name: qname, seq: seq, qual: qual)
     entry[:QUAL]  = qual
 
     # Optional fields - where some are really important! HATE HATE HATE SAM!!!