fixed qual scores in sam.rb

[biopieces.git] / code_ruby / lib / maasha / sam.rb

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index cf5acda4683c12bb63407d02b0abbdbc9318a37e..ba192c3c1b46c5051f570cbe099781c6da64fc43 100644 (file)
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -76,7 +76,7 @@ class Sam < Filesys
     bp[:SEQ]      = sam[:SEQ].seq
 
     unless sam[:SEQ].qual.nil?
-      bp[:SCORES] = sam[:SEQ].qual
+      bp[:SCORES] = sam[:SEQ].qual_convert!(:base_64, :base_33).qual
     end
 
     if sam[:NM] and sam[:NM].to_i > 0