def na_add_entries
@entries.each_with_index do |entry, i|
@na_seq[true, i] = NArray.to_na(entry.seq.downcase.tr(TR_NUC, TR_HEX), "byte")
- @na_qual[true, i] = NArray.to_na(entry.qual, "byte") - SCORE_BASE if @has_qual
+ @na_qual[true, i] = NArray.to_na(entry.qual, "byte") - Seq::SCORE_BASE if @has_qual
end
end
# Method to calculate a consensus quality from a Consensus object.
def consensus_qual
- (@na_qual.mean(1).round.to_type("byte") + SCORE_BASE).to_s
+ (@na_qual.mean(1).round.to_type("byte") + Seq::SCORE_BASE).to_s
end
end
end