added gzip/bzip2 output option to write_fastq_files

[biopieces.git] / bp_test / test / test_write_fastq_files

diff --git a/bp_test/test/test_write_fastq_files b/bp_test/test/test_write_fastq_files
index 89442b640f32ef86e7f4ee05f9f0c24cca7aa99c..7babe73dccbeda5bb338317055595ab927f637bd 100755 (executable)
--- a/bp_test/test/test_write_fastq_files
+++ b/bp_test/test/test_write_fastq_files
@@ -3,25 +3,33 @@
 source "$BP_DIR/bp_test/lib/test.sh"
 
 mkdir $tmp_dir
-
 run "$bp -I $in -d $tmp_dir -k SEQ_NAME -x"
 assert_no_diff_dir $tmp_dir $out.1
 clean
-
 rm -rf $tmp_dir
 
 mkdir $tmp_dir
-
 run "$bp -I $in -e base_33 -d $tmp_dir -k SEQ_NAME -x"
 assert_no_diff_dir $tmp_dir $out.1
 clean
-
 rm -rf $tmp_dir
 
 mkdir $tmp_dir
-
 run "$bp -I $in -e base_64 -d $tmp_dir -k SEQ_NAME -x"
 assert_no_diff_dir $tmp_dir $out.2
 clean
+rm -rf $tmp_dir
+
+mkdir $tmp_dir
+run "$bp -I $in -e base_64 -d $tmp_dir -k SEQ_NAME -Z gzip -x"
+gunzip $tmp_dir/*.gz
+assert_no_diff_dir $tmp_dir $out.2
+clean
+rm -rf $tmp_dir
 
+mkdir $tmp_dir
+run "$bp -I $in -e base_64 -d $tmp_dir -k SEQ_NAME -Z bzip2 -x"
+bunzip2 $tmp_dir/*.bz2
+assert_no_diff_dir $tmp_dir $out.2
+clean
 rm -rf $tmp_dir