fixed overlap bug in patscan_seq

[biopieces.git] / bp_test / out / patscan_seq.out.4

diff --git a/bp_test/out/patscan_seq.out.4 b/bp_test/out/patscan_seq.out.4
index 42fb5f5893ce6e4ed87919aa992cf8b935393e5c..d3fd5fca3eaf76c1336a0177df3aa4f4ab71c752 100644 (file)
--- a/bp_test/out/patscan_seq.out.4
+++ b/bp_test/out/patscan_seq.out.4
@@ -1,30 +1,70 @@
 KEY: VALUE
 ---
-SEQ_NAME: test1
-SEQ: LLRVDNIIRARPRTANRQHM
+SEQ_NAME: test
+SEQ: GGACTACNNGGGTATCTAATAGTC
 SEQ_LEN: 20
 ---
 REC_TYPE: PATSCAN
-S_ID: test1
-Q_ID: RARP
-MATCH: RARP
-S_BEG: 8
+S_ID: test
+Q_ID: GG
+MATCH: GG
+S_BEG: 0
+S_END: 1
+STRAND: +
+SCORE: 100
+MATCH_LEN: 2
+---
+REC_TYPE: PATSCAN
+S_ID: test
+Q_ID: GG
+MATCH: GG
+S_BEG: 9
+S_END: 10
+STRAND: +
+SCORE: 100
+MATCH_LEN: 2
+---
+REC_TYPE: PATSCAN
+S_ID: test
+Q_ID: GG
+MATCH: GG
+S_BEG: 10
 S_END: 11
 STRAND: +
 SCORE: 100
-MATCH_LEN: 4
+MATCH_LEN: 2
 ---
 SEQ_NAME: test2
-SEQ: NIIRARPRTAN
-SEQ_LEN: 11
+SEQ: GGACTACNNGGGTATCTAATGCATACG
+SEQ_LEN: 27
 ---
 REC_TYPE: PATSCAN
 S_ID: test2
-Q_ID: RARP
-MATCH: RARP
-S_BEG: 3
-S_END: 6
+Q_ID: GG
+MATCH: GG
+S_BEG: 0
+S_END: 1
+STRAND: +
+SCORE: 100
+MATCH_LEN: 2
+---
+REC_TYPE: PATSCAN
+S_ID: test2
+Q_ID: GG
+MATCH: GG
+S_BEG: 9
+S_END: 10
+STRAND: +
+SCORE: 100
+MATCH_LEN: 2
+---
+REC_TYPE: PATSCAN
+S_ID: test2
+Q_ID: GG
+MATCH: GG
+S_BEG: 10
+S_END: 11
 STRAND: +
 SCORE: 100
-MATCH_LEN: 4
+MATCH_LEN: 2
 ---