revamped find_homopolymers

[biopieces.git] / bp_test / out / find_homopolymers.out.2

diff --git a/bp_test/out/find_homopolymers.out.2 b/bp_test/out/find_homopolymers.out.2
index 921394166b29317b0cbcca868090e4d27e0eada1..5eeb22cd85c84b26fcaac87377aebf9c316ad897 100644 (file)
--- a/bp_test/out/find_homopolymers.out.2
+++ b/bp_test/out/find_homopolymers.out.2
@@ -1,20 +1,50 @@
 SEQ_NAME: test1
 SEQ: attcccggggnnnnn
 SEQ_LEN: 15
-HOMOPOL_MAX: 5
+HOMOPOL_PAT: CCC
+HOMOPOL_LEN: 3
+HOMOPOL_POS: 3
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: GGGG
+HOMOPOL_LEN: 4
+HOMOPOL_POS: 6
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: NNNNN
+HOMOPOL_LEN: 5
+HOMOPOL_POS: 10
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: NNNNN
+HOMOPOL_LEN: 5
+HOMOPOL_POS: 0
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: GGGG
+HOMOPOL_LEN: 4
+HOMOPOL_POS: 5
 ---
 SEQ_NAME: test2
 SEQ: nnnnnggggccctta
 SEQ_LEN: 15
-HOMOPOL_MAX: 5
+HOMOPOL_PAT: CCC
+HOMOPOL_LEN: 3
+HOMOPOL_POS: 9
 ---
 SEQ_NAME: test3
 SEQ: a
 SEQ_LEN: 1
-HOMOPOL_MAX: 0
 ---
 SEQ_NAME: test4
 SEQ: aA
 SEQ_LEN: 2
-HOMOPOL_MAX: 0
 ---