revamped find_homopolymers

[biopieces.git] / bp_test / out / find_homopolymers.out.1

diff --git a/bp_test/out/find_homopolymers.out.1 b/bp_test/out/find_homopolymers.out.1
index fcd0ce96c387b5c32e8cceed9a3cef9114021492..105c6a7941b4ead72555f16337c555bb71d41c02 100644 (file)
--- a/bp_test/out/find_homopolymers.out.1
+++ b/bp_test/out/find_homopolymers.out.1
@@ -1,20 +1,84 @@
 SEQ_NAME: test1
 SEQ: attcccggggnnnnn
 SEQ_LEN: 15
-HOMOPOL_MAX: 5
+HOMOPOL_PAT: A
+HOMOPOL_LEN: 1
+HOMOPOL_POS: 0
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: TT
+HOMOPOL_LEN: 2
+HOMOPOL_POS: 1
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: CCC
+HOMOPOL_LEN: 3
+HOMOPOL_POS: 3
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: GGGG
+HOMOPOL_LEN: 4
+HOMOPOL_POS: 6
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: NNNNN
+HOMOPOL_LEN: 5
+HOMOPOL_POS: 10
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: NNNNN
+HOMOPOL_LEN: 5
+HOMOPOL_POS: 0
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: GGGG
+HOMOPOL_LEN: 4
+HOMOPOL_POS: 5
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: CCC
+HOMOPOL_LEN: 3
+HOMOPOL_POS: 9
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: TT
+HOMOPOL_LEN: 2
+HOMOPOL_POS: 12
 ---
 SEQ_NAME: test2
 SEQ: nnnnnggggccctta
 SEQ_LEN: 15
-HOMOPOL_MAX: 5
+HOMOPOL_PAT: A
+HOMOPOL_LEN: 1
+HOMOPOL_POS: 14
 ---
 SEQ_NAME: test3
 SEQ: a
 SEQ_LEN: 1
-HOMOPOL_MAX: 1
+HOMOPOL_PAT: A
+HOMOPOL_LEN: 1
+HOMOPOL_POS: 0
 ---
 SEQ_NAME: test4
 SEQ: aA
 SEQ_LEN: 2
-HOMOPOL_MAX: 2
+HOMOPOL_PAT: AA
+HOMOPOL_LEN: 2
+HOMOPOL_POS: 0
 ---