finish assemble_pairs revamp

[biopieces.git] / bp_test / out / assemble_pairs.out.2

diff --git a/bp_test/out/assemble_pairs.out.2 b/bp_test/out/assemble_pairs.out.2
index 927fdea920e06779e07c1a7dbd92f3da298a46f9..af608609268c1fdf4fb9e674ddbcbb7dc55f3736 100644 (file)
--- a/bp_test/out/assemble_pairs.out.2
+++ b/bp_test/out/assemble_pairs.out.2
@@ -1,15 +1,21 @@
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139:14
-SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACGCTGAGGAACGAAAGCATGGGTAGCGAAGA
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 1:N:0:14:overlap=96:hamming=2
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGaagggacctagcgtagttcggaattactgggcttaaagagttcgtaggtggttaaaaaagttggtggtgaaatcccagagcttaactctggaactgCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACGCTGAGGAACGAAAGCATGGGTAGCGAAGA
 SEQ_LEN: 402
-SCORES: "???9?BBBDBDDBDDFFFFFFHHHIFHFHHIHHFHHHHEDDEGHHHCEHE?EFHFGHFHFHIHIIIHCECEHHHIFHIIIHGHFHHHHHHEEFFFFFEEFFFEFFFEEEEEFFFFFFFCEFBEEDEFFFFFFEFEFFEEFFFFDDDDA?EEEFF>:@:*?7.).4)1**?=8:BA?<*>18*>?>8@BA:=:>89)=ABB@891*:B?:>A@!.09=860'.)79*>B>*>*>?*:><4*!..;C@A><9A=AEECCEEEEDB=FFEFEEEDEFFFBFFFFF?.HFDBDD?FFHFHFFFHFFFHHGGGGCBFAHHIHFHHHGCGGIIIHHHGE5"HFBDE@E@DGHHHFFFHIHHFFGFDC0?E?FHEHEHIIHHFHIHFHFFFFFFDDBDBADD?BB??"
+SCORES: !???9?BBBDBDDBDDFFFFFFHHHIFHFHHIHHFHHHHEDDEGHHHCEHE?EFHFGHFHFHIHIIIHCECEHHHIFHIIIHGHFHHHHHHEEFFFFFEEFFFEFFFEEEEEFFFFFFFCEFBEEDEFFFFFFEFEFFEEFFFFDDDDA?EEEFFB@C?8B=:7785;660@?@FEB?7B;?2BBA?CED@@@B?=5@DEFD??;8@E0@BEC788>@?95*4-:=7BEB8B7BB2@B?8&+98>2CDBB>A=AEECCEEEEDB=FFEFEEEDEFFFBFFFFF?.HFDBDD?FFHFHFFFHFFFHHGGGGCBFAHHIHFHHHGCGGIIIHHHGE5!HFBDE@E@DGHHHFFFHIHHFFGFDC0?E?FHEHEHIIHHFHIHFHFFFFFFDDBDBADD?BB??!
+OVERLAP_LEN: 96
+HAMMING_DIST: 2
 ---
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158:14
-SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAG
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 1:N:0:14:overlap=96:hamming=0
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACgaagggacctagcgtagttcggaattactgggcttaaagagttcgtaggtggttaaaaaagttggtggtgaaatcccagagcttaactctggaactGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAG
 SEQ_LEN: 401
-SCORES: ?????BBBBBDDBDDBFFFFFFECHFHFHFHGHHFGD?"CFHHHHHH"DEEFFFFDFFHF@FHHHIFHEEHHHIIHHHIHIHHHDEHHHHFEEFFF?FEEEEFEEFFEE:"CEEFEFFFBEEEEEDEFE::AE:?AECEFEF?A";D88;CEEE@::*0/@@>@8:@70<4-)9@A>9@?:008*:?:@@AB:A=9*=?8>?>7*0/*:@A?9*=9??:7*67)9*7/:>*:98**1**11<=9@>A@:=CC;EEEEEEDEEDD;=DFB?FFDFFFB?C=FFFF?HHFDD@.DCFHHFHHHGFHHFHHGECBFFFEF?CHFGEA??HHHIHHHFC"E@DDEDDFHHHDHGGFBE?C=FF?CC?=F?CHFA9C0GBHFFHF;HFFF?FFBBBBB?BB?B??"
+SCORES: ?????BBBBBDDBDDBFFFFFFECHFHFHFHGHHFGD?!CFHHHHHH!DEEFFFFDFFHF@FHHHIFHEEHHHIIHHHIHIHHHDEHHHHFEEFFF?FEEEEFEEFFEE:!CEEFEFFFBEEEEEDEFE::AE:?AECEFEF?A!;D88;CEEEC@@668CCBC??C;8?+02>CEA>CB@;;?8@B@CCDE@D@?5@B>ABB:2::1>CDB=/@>BB@<19=4?6:7@A6@=?36875:8?A=DBDC@ACC;EEEEEEDEEDD;=DFB?FFDFFFB?C=FFFF?HHFDD@.DCFHHFHHHGFHHFHHGECBFFFEF?CHFGEA??HHHIHHHFC!E@DDEDDFHHHDHGGFBE?C=FF?CC?=F?CHFA9C0GBHFFHF;HFFF?FFBBBBB?BB?B??!
+OVERLAP_LEN: 96
+HAMMING_DIST: 0
 ---
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253:14
-SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGTGGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAACATCAAAAGCGAAGGCAACTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAGAGG
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 1:N:0:14:overlap=96:hamming=1
+SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACgaagggacctagcgtagttcggaattactgggcttaaagagttcgtaggtggttaaaaaagttgatggtgaaatcccaaggctcaaccttggaactGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGTGGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAACATCAAAAGCGAAGGCAACTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAGAGG
 SEQ_LEN: 403
-SCORES: "???B-"-?"BBBBBFFF;"CEEECC;EFFH=EGBE=CEFHD@CDCE"+"5C=FBAEADHFEHHHHHHECCG=CD=CCF=DC=DDACEE5:DEEEECBECEC3?3;?B:@CEEECEEC?CC????E?CAAAE?ACEEEEEEEE????A;)::A?@B>0@>!36.')&)01)@>:9BB>99<7*799:*=*>*9'/6'77070**01A7>A**4*-9@B?*:*/0/>99=**0*)*,78.)/89*/9=9,4.EFEEEEDDEFBDDFFFFFFHHHHFFCC.?HFFCFHFDFDDFFGBBHHHHFGDHHGGBHIHHIIHHHDGHHHFECHHIIHFHGEA+HHFC@EHIIHHGFEGHHFGDHGDDC0?GGFGC90A0DBFFIIHFHFFFFFBBBBBDBB??BB?????
+SCORES: !???B-!-?!BBBBBFFF;!CEEECC;EFFH=EGBE=CEFHD@CDCE!+!5C=FBAEADHFEHHHHHHECCG=CD=CCF=DC=DDACEE5:DEEEECBECEC3?3;?B:@CEEECEEC?CC????E?CAAAE?ACEEEEEEEE????A;)::ABCEB8CA669967)2955CA@=FEB=??<2:>?@6@7B7>449*<<9<957:9D;AD88;60?CEB2@8:;:B?>@749-663=<2-6<>46>A=64.EFEEEEDDEFBDDFFFFFFHHHHFFCC.?HFFCFHFDFDDFFGBBHHHHFGDHHGGBHIHHIIHHHDGHHHFECHHIIHFHGEA+HHFC@EHIIHHGFEGHHFGDHGDDC0?GGFGC90A0DBFFIIHFHFFFFFBBBBBDBB??BB?????
+OVERLAP_LEN: 96
+HAMMING_DIST: 1
 ---