format_genome fix

[biopieces.git] / bp_conf / bashrc

diff --git a/bp_conf/bashrc b/bp_conf/bashrc
index cdeadf3a8b381c14ffdcf192813143e080792ce0..c7557d92cf49b79a5ba1aa51198a0dfaa2c3dfd7 100644 (file)
--- a/bp_conf/bashrc
+++ b/bp_conf/bashrc
@@ -2,14 +2,8 @@
 
 ### Stuff that enables biopieces.
 
-### Initially we need to configure the directories where biopieces are installed
-### and where the data (genomes and indexes) that the biopieces work on are installed.
-### Allso, it is possible to change the temporary directory from the system's tmp.
-
-export BP_DIR="/Users/m.hansen/biopieces"         # Directory where biopieces are installed
-export BP_DATA="/Users/m.hansen/BP_DATA"          # Contains genomic data etc.
-export BP_TMP="/tmp"                              # Required temporary directory.
-
+### BP_DIR, BP_DATA and BP_TMP should all be set in ~/.bashrc
+### see http://code.google.com/p/biopieces/wiki/Installation
 
 ### The below bin directory should hold biopiece executables - regardsles of programming language.
 
@@ -22,7 +16,6 @@ export BP_C="$BP_DIR/code_c"                # Direcotry with c code.
 export BP_PYTHON="$BP_DIR/code_python"      # Direcotry with Pyton code.
 export BP_RUBY="$BP_DIR/code_ruby"          # Direcotry with Ruby code.
 
-
 ### Here we add the biopiece variable to the existing PATH and PERL5LIB variables.
 
 export PATH="$PATH:$BP_BIN"