refactoring of ruby code converting sequences types to symbols

[biopieces.git] / bp_bin / shred_seq

diff --git a/bp_bin/shred_seq b/bp_bin/shred_seq
index ffd79cb9252bef5dbf2f95258779c1960ef41cf7..94d5835e53837f84b0e81aa8bffa9200feb557cf 100755 (executable)
--- a/bp_bin/shred_seq
+++ b/bp_bin/shred_seq
@@ -85,7 +85,7 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
   input.each_record do |record|
     if record[:SEQ] and record[:SEQ].length >= options[:size]
       entry      = Seq.new(record[:SEQ_NAME], record[:SEQ], record[:SCORES])
-      entry.type = 'dna'
+      entry.type = :dna
 
       entry.shred(options[:size], options[:coverage]) do |subentry|
         output.puts subentry.to_bp