fixed to_i bug in pcr_seq

[biopieces.git] / bp_bin / pcr_seq

diff --git a/bp_bin/pcr_seq b/bp_bin/pcr_seq
index 8700276e16287559ed9fe37f1d33b8c26c382e7a..5cee30b152e49d2d0a6c7013c6d05952b80bc57a 100755 (executable)
--- a/bp_bin/pcr_seq
+++ b/bp_bin/pcr_seq
@@ -195,8 +195,8 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
         record[:TYPE]     = File.basename(outfile).sub(".fna", "").upcase
         record[:SEQ_NAME].match(/(.+):\[(\d+),(\d+)\]$/)
         record[:SEQ_NAME] = $1
-        record[:PCR_BEG]  = $2
-        record[:PCR_END]  = $3
+        record[:PCR_BEG]  = $2.to_i
+        record[:PCR_END]  = $3.to_i
 
         if record[:PCR_BEG] > record[:PCR_END]
           record[:PCR_BEG], record[:PCR_END] = record[:PCR_END], record[:PCR_BEG]