adding bzip2 support in ruby

[biopieces.git] / bp_bin / patscan_seq

diff --git a/bp_bin/patscan_seq b/bp_bin/patscan_seq
index a209bc6f104fb004fc5aba4d48b4d5eda2d17029..28f028dec433ccb5ac8ccd32c6d4ba59b9d08a0d 100755 (executable)
--- a/bp_bin/patscan_seq
+++ b/bp_bin/patscan_seq
@@ -161,7 +161,7 @@ seq_name_hash  = {}
 seq_type       = nil
 
 Biopieces.open(options[:stream_in], tmp_file) do |input, output|
-  Fasta.open(in_file, mode="w") do |fasta_io|
+  Fasta.open(in_file, "w") do |fasta_io|
     input.each_record do |record|
       if record[:SEQ_NAME]
         seq_name_hash[seq_name_count] = record[:SEQ_NAME]