refactoring of ruby code converting sequences types to symbols

[biopieces.git] / bp_bin / find_adaptor

diff --git a/bp_bin/find_adaptor b/bp_bin/find_adaptor
index ac3681a090c8e80c6139a4d1640ce4dd97664430..f2f593d1ce90f11087b04ca9d2abc8a58a40b264 100755 (executable)
--- a/bp_bin/find_adaptor
+++ b/bp_bin/find_adaptor
@@ -53,11 +53,11 @@ casts << {:long=>'deletions',   :short=>'d', :type=>'uint',   :mandatory=>false,
 options = Biopieces.options_parse(ARGV, casts)
 
 if options[:forward_rc]
-  options[:forward] = Seq.new("test", options[:forward_rc], 'dna').reverse.complement.seq
+  options[:forward] = Seq.new("test", options[:forward_rc], :dna).reverse.complement.seq
 end
 
 if options[:reverse_rc]
-  options[:reverse] = Seq.new("test", options[:reverse_rc], 'dna').reverse.complement.seq
+  options[:reverse] = Seq.new("test", options[:reverse_rc], :dna).reverse.complement.seq
 end
 
 raise ArgumentError, "no adaptor specified" unless options[:forward] or options[:reverse]