changed Seq.new argument to hash

[biopieces.git] / bp_bin / find_adaptor

diff --git a/bp_bin/find_adaptor b/bp_bin/find_adaptor
index f2f593d1ce90f11087b04ca9d2abc8a58a40b264..c4df418f571556bf663c89cf3ab0f23f2f6074b5 100755 (executable)
--- a/bp_bin/find_adaptor
+++ b/bp_bin/find_adaptor
@@ -53,11 +53,11 @@ casts << {:long=>'deletions',   :short=>'d', :type=>'uint',   :mandatory=>false,
 options = Biopieces.options_parse(ARGV, casts)
 
 if options[:forward_rc]
-  options[:forward] = Seq.new("test", options[:forward_rc], :dna).reverse.complement.seq
+  options[:forward] = Seq.new(seq: options[:forward_rc], type: :dna).reverse.complement.seq
 end
 
 if options[:reverse_rc]
-  options[:reverse] = Seq.new("test", options[:reverse_rc], :dna).reverse.complement.seq
+  options[:reverse] = Seq.new(seq: options[:reverse_rc], type: :dna).reverse.complement.seq
 end
 
 raise ArgumentError, "no adaptor specified" unless options[:forward] or options[:reverse]