removed debug code from find_adaptor

[biopieces.git] / bp_bin / find_adaptor

diff --git a/bp_bin/find_adaptor b/bp_bin/find_adaptor
index 5b2c96b76403428a3ae776d81cbbdda87587e046..0534572bd4ff08669f934a57d1d1bfc9a64d9486 100755 (executable)
--- a/bp_bin/find_adaptor
+++ b/bp_bin/find_adaptor
@@ -106,8 +106,7 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
             fdel = percent2real(len, options[:deletions])
 
             pat = pat[1 ... pat.length]
-$stderr.puts pat
-$stderr.puts entry.seq[0 ... len]
+
             if m = entry.patmatch(pat, [0, len], fmis, fins, fdel)
               record[:ADAPTOR_POS_LEFT] = m.pos
               record[:ADAPTOR_LEN_LEFT] = m.length