finish assemble_pairs revamp

[biopieces.git] / bp_bin / assemble_pairs

diff --git a/bp_bin/assemble_pairs b/bp_bin/assemble_pairs
index 66c2a7bd68015572df1cb530746e539005027cce..4bb1152d5ebea74aec4786eab5db1c2d5ef11109 100755 (executable)
--- a/bp_bin/assemble_pairs
+++ b/bp_bin/assemble_pairs
@@ -55,7 +55,7 @@ end
 
 casts = []
 casts << {:long=>'mismatches',  :short=>'m', :type=>'uint', :mandatory=>false, :default=>5,   :allowed=>nil, :disallowed=>nil}
-casts << {:long=>'overlap_min', :short=>'o', :type=>'uint', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>"0"}
+casts << {:long=>'overlap_min', :short=>'o', :type=>'uint', :mandatory=>false, :default=>1,   :allowed=>nil, :disallowed=>"0"}
 casts << {:long=>'overlap_max', :short=>'p', :type=>'uint', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>"0"}
 
 options = Biopieces.options_parse(ARGV, casts)