#!/usr/bin/env perl

# Copyright (C) 2007-2009 Martin A. Hansen.

# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.

# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

# http://www.gnu.org/copyleft/gpl.html


# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> DESCRIPTION <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<

# Display available genomes.

# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<


use warnings;
use strict;
use Term::ANSIColor;
use Maasha::Common;
use Maasha::Biopieces;


# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<


my ( $options, @genomes, $genome, @formats, $format, %hash, %found, @row );

$options = Maasha::Biopieces::parse_options();

@genomes = Maasha::Filesys::ls_dirs( "$ENV{ 'BP_DATA' }/genomes" );

foreach $genome ( @genomes )
{
    next if $genome =~ /\.$/;

    @formats = Maasha::Filesys::ls_dirs( $genome );

    foreach $format ( @formats )
    {
        if ( $format =~ /\/([^\/]+)\/(\w+)$/ )
        {
            $hash{ $1 }{ $2 } = 1;

            $found{ $2 } = 1;
        }
    }
}

@row = "Genome";

map { push @row, $_ } sort keys %found;

print join( "\t", @row ), "\n";

foreach $genome ( sort keys %hash )
{
    @row = $genome;

    foreach $format ( sort keys %found )
    {
        if ( exists $hash{ $genome }{ $format } ) {
            push @row, colored( "yes", "green" );
        } else {
            push @row, colored( "no", "red" );
        }
    }

    print join( "\t", @row ), "\n";
}


# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<


BEGIN
{
    Maasha::Biopieces::status_set();
}


END
{
    Maasha::Biopieces::status_log();
}


# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<


__END__