From ffe08406d4839cc92238a9a65e09c630330f5065 Mon Sep 17 00:00:00 2001
From: Chase Miller <chmille4@gmail.com>
Date: Wed, 24 Jul 2013 13:02:09 -0400
Subject: [PATCH] Fix invalid json output

add quotes to the filename variable so that the json outputed is valid json
---
 src/toolkit/bamtools_convert.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/toolkit/bamtools_convert.cpp b/src/toolkit/bamtools_convert.cpp
index b0aae07..54820e7 100644
--- a/src/toolkit/bamtools_convert.cpp
+++ b/src/toolkit/bamtools_convert.cpp
@@ -423,7 +423,7 @@ void ConvertTool::ConvertToolPrivate::PrintJson(const BamAlignment& a) {
     }
     
     // write alignment's source BAM file
-    m_out << "\"filename\":" << a.Filename << ",";
+    m_out << "\"filename\":\"" << a.Filename << "\",";
 
     // write tag data
     const char* tagData = a.TagData.c_str();
-- 
2.39.2