From cf5ad68fc395bd521bf24274479a630d0f0d2d2c Mon Sep 17 00:00:00 2001
From: derek <derekwbarnett@gmail.com>
Date: Wed, 22 Feb 2012 21:49:18 -0500
Subject: [PATCH 1/1] Provided initialization values for previously unspecified
 (potentially garbage) integer fields in default-constructed BamAlignments

---
 src/api/BamAlignment.cpp | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/src/api/BamAlignment.cpp b/src/api/BamAlignment.cpp
index 0b13fb4..3a508c4 100644
--- a/src/api/BamAlignment.cpp
+++ b/src/api/BamAlignment.cpp
@@ -2,7 +2,7 @@
 // BamAlignment.cpp (c) 2009 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 17 October 2011 (DB)
+// Last modified: 22 February 2012 (DB)
 // ---------------------------------------------------------------------------
 // Provides the BamAlignment data structure
 // ***************************************************************************
@@ -70,8 +70,12 @@ using namespace std;
     \brief constructor
 */
 BamAlignment::BamAlignment(void)
-    : RefID(-1)
+    : Length(0)
+    , RefID(-1)
     , Position(-1)
+    , Bin(0)
+    , MapQuality(0)
+    , AlignmentFlag(0)
     , MateRefID(-1)
     , MatePosition(-1)
     , InsertSize(0)
-- 
2.39.2