From b307a397f7d818d0fa064b91229e312707e43951 Mon Sep 17 00:00:00 2001 From: Derek Barnett Date: Thu, 25 Jul 2013 14:22:50 -0400 Subject: [PATCH] Updated BamAlignment documentation, re: QueryBases field (issue #12) --- src/api/BamAlignment.h | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/api/BamAlignment.h b/src/api/BamAlignment.h index e12aad6..0f4fe73 100644 --- a/src/api/BamAlignment.h +++ b/src/api/BamAlignment.h @@ -2,7 +2,7 @@ // BamAlignment.h (c) 2009 Derek Barnett // Marth Lab, Department of Biology, Boston College // --------------------------------------------------------------------------- -// Last modified: 4 December 2012 (DB) +// Last modified: 25 July 2013 (DB) // --------------------------------------------------------------------------- // Provides the BamAlignment data structure // *************************************************************************** @@ -116,8 +116,8 @@ struct API_EXPORT BamAlignment { public: std::string Name; // read name int32_t Length; // length of query sequence - std::string QueryBases; // 'original' sequence (as reported from sequencing machine) - std::string AlignedBases; // 'aligned' sequence (includes any indels, padding, clipping) + std::string QueryBases; // 'original' sequence (contained in BAM file) + std::string AlignedBases; // 'aligned' sequence (QueryBases plus deletion, padding, clipping chars) std::string Qualities; // FASTQ qualities (ASCII characters, not numeric values) std::string TagData; // tag data (use provided methods to query/modify) int32_t RefID; // ID number for reference sequence -- 2.39.2