From 2fe0265511837d14f354a7f4f7cfaf42ceb07826 Mon Sep 17 00:00:00 2001 From: Derek Barnett Date: Mon, 10 Dec 2012 11:59:56 -0500 Subject: [PATCH] Fixed: BamWriter - quality string starting with '*' (GH issue #68) --- src/api/internal/bam/BamWriter_p.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/api/internal/bam/BamWriter_p.cpp b/src/api/internal/bam/BamWriter_p.cpp index 1bb086f..637bb7a 100644 --- a/src/api/internal/bam/BamWriter_p.cpp +++ b/src/api/internal/bam/BamWriter_p.cpp @@ -284,7 +284,7 @@ void BamWriterPrivate::WriteAlignment(const BamAlignment& al) { // write the base qualities char* pBaseQualities = new char[queryLength](); - if ( al.Qualities.empty() || al.Qualities[0] == '*' || al.Qualities[0] == (char)0xFF ) + if ( al.Qualities.empty() || ( al.Qualities.size() == 1 && al.Qualities[0] == '*' ) || al.Qualities[0] == (char)0xFF ) memset(pBaseQualities, 0xFF, queryLength); // if missing or '*', fill with invalid qual else { for ( size_t i = 0; i < queryLength; ++i ) -- 2.39.2