Provided initialization values for previously unspecified (potentially

garbage) integer fields in default-constructed BamAlignments

diff --git a/src/api/BamAlignment.cpp b/src/api/BamAlignment.cpp
index 0b13fb4121786277de72218c676fc29f38c4d648..3a508c4cb2891b44ca24afa25f9845027cffb33c 100644 (file)
--- a/src/api/BamAlignment.cpp
+++ b/src/api/BamAlignment.cpp
@@ -2,7 +2,7 @@
 // BamAlignment.cpp (c) 2009 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 17 October 2011 (DB)
+// Last modified: 22 February 2012 (DB)
 // ---------------------------------------------------------------------------
 // Provides the BamAlignment data structure
 // ***************************************************************************
@@ -70,8 +70,12 @@ using namespace std;
     \brief constructor
 */
 BamAlignment::BamAlignment(void)
-    : RefID(-1)
+    : Length(0)
+    , RefID(-1)
     , Position(-1)
+    , Bin(0)
+    , MapQuality(0)
+    , AlignmentFlag(0)
     , MateRefID(-1)
     , MatePosition(-1)
     , InsertSize(0)