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(parent: cd65666) | patch
Fixed: sorting order lost during merge step of sort tool, if input BAM
authorderek <derekwbarnett@gmail.com>
Tue, 27 Mar 2012 16:03:54 +0000 (12:03 -0400)
committerderek <derekwbarnett@gmail.com>
Tue, 27 Mar 2012 16:03:54 +0000 (12:03 -0400)
commit76bb08a359f3974eee3e96327b965ccf7958ed1a
tree75a6a4324dc52cd01b90f44fe565101cc90e743ftree | snapshot
parentcd6566664db03680573d36ca7ae70a243724c8a8commit | diff
Fixed: sorting order lost during merge step of sort tool, if input BAM
lacked SAM header
 * Due to lack of SO tag in temp files. This tag is set just fine on
input BAMs containing SAM headers. However, when an input file lacked
one, especially the (required) VN number, the entire @HD line was
dropped.
 * Forcing the current SAM version number, if none exists, on sort
output.
CMakeLists.txt diff | blob | history
src/api/SamConstants.h diff | blob | history
src/toolkit/CMakeLists.txt diff | blob | history
src/toolkit/bamtools_sort.cpp diff | blob | history
Branch of bamtools which has rudimentary Debian packaging