X-Git-Url: https://git.donarmstrong.com/?p=bamtools.git;a=blobdiff_plain;f=src%2Fapi%2FCMakeLists.txt;h=a9dd0924a2925e7c661f71e6267b02489961b943;hp=fb2d48506fde36a6fb53a10e0091722383f4ae4d;hb=71065ecaf5951e21ca202138e7013fce5d634b88;hpb=369e2de20a6d939d07ffc09462167a3b688bbdde

diff --git a/src/api/CMakeLists.txt b/src/api/CMakeLists.txt
index fb2d485..a9dd092 100644
--- a/src/api/CMakeLists.txt
+++ b/src/api/CMakeLists.txt
@@ -6,31 +6,78 @@
 # ==========================
 
 # list include paths
-include_directories ( ${BamTools_SOURCE_DIR}/src )
+include_directories( ${BamTools_SOURCE_DIR}/src )
 
 # add compiler definitions 
-add_definitions(-DBAMTOOLS_API_LIBRARY) # (for proper exporting of library symbols)
-
-# create main BamTools API library
-add_library ( BamTools SHARED 
-              BamAlignment.cpp 
-              BamIndex.cpp 
-              BamMultiReader.cpp
-              BamReader.cpp
-              BamWriter.cpp
-              BGZF.cpp
-	      internal/BamReader_p.cpp
-	      internal/BamStandardIndex_p.cpp
-	      internal/BamToolsIndex_p.cpp
-	      internal/BamWriter_p.cpp
-            )
-
-# link BamTools library with zlib automatically
-target_link_libraries ( BamTools z )
-
-# set BamTools library properties
+add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
+add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
+
+# fetch all internal source files
+add_subdirectory( internal )
+
+# make list of all API source files
+set( BamToolsAPISources
+        BamAlignment.cpp
+        BamMultiReader.cpp
+        BamReader.cpp
+        BamWriter.cpp
+        SamHeader.cpp
+        SamProgram.cpp
+        SamProgramChain.cpp
+        SamReadGroup.cpp
+        SamReadGroupDictionary.cpp
+        SamSequence.cpp
+        SamSequenceDictionary.cpp
+        ${InternalSources}
+)
+
+# create main BamTools API shared library
+add_library( BamTools SHARED ${BamToolsAPISources} )
 set_target_properties( BamTools PROPERTIES
-                       SOVERSION   0.9.0
-                       OUTPUT_NAME bamtools
-                     )
+                       SOVERSION "2.2.3"
+                       OUTPUT_NAME "bamtools" )
+
+# create main BamTools API static library
+add_library( BamTools-static STATIC ${BamToolsAPISources} )
+set_target_properties( BamTools-static PROPERTIES 
+                       OUTPUT_NAME "bamtools" 
+                       PREFIX "lib" )
+
+# link libraries automatically with zlib (and Winsock2, if applicable)
+if( WIN32 )
+    set( APILibs z ws2_32 )
+else()
+    set( APILibs z )
+endif()
+
+target_link_libraries( BamTools ${APILibs} )
+target_link_libraries( BamTools-static ${APILibs} )
+
+# set library install destinations
+install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
+
+# export API headers
+include(../ExportHeader.cmake)
+set(ApiIncludeDir "api")
+ExportHeader(APIHeaders api_global.h             ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlgorithms.h          ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlignment.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAux.h                 ${ApiIncludeDir})
+ExportHeader(APIHeaders BamConstants.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders BamIndex.h               ${ApiIncludeDir})
+ExportHeader(APIHeaders BamMultiReader.h         ${ApiIncludeDir})
+ExportHeader(APIHeaders BamReader.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders BamWriter.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders IBamIODevice.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamConstants.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamHeader.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgram.h             ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgramChain.h        ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroup.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequence.h            ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequenceDictionary.h  ${ApiIncludeDir})
 
+set( AlgorithmsIncludeDir "api/algorithms" )
+ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )