Implemented binary search through bins in BAI

[bamtools.git] / src / api / internal / BamStandardIndex_p.h

diff --git a/src/api/internal/BamStandardIndex_p.h b/src/api/internal/BamStandardIndex_p.h
index 7c61a6296b1dd95b6da0b29ae27a19d943df5cd8..7123ae72a0dda76234541a4e7f8671ef6fae812c 100644 (file)
--- a/src/api/internal/BamStandardIndex_p.h
+++ b/src/api/internal/BamStandardIndex_p.h
@@ -3,7 +3,7 @@
 // Marth Lab, Department of Biology, Boston College
 // All rights reserved.
 // ---------------------------------------------------------------------------
-// Last modified: 5 April 2011 (DB)
+// Last modified: 24 June 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides index operations for the standardized BAM index format (".bai")
 // ***************************************************************************
@@ -161,7 +161,7 @@ class BamStandardIndex : public BamIndex {
                                        std::set<uint16_t>& candidateBins,
                                        std::vector<int64_t>& offsets);
         uint64_t CalculateMinOffset(const BaiReferenceSummary& refSummary, const uint32_t& begin);
-        bool GetOffsets(const BamRegion& region, std::vector<int64_t>& offsets);
+        bool GetOffset(const BamRegion& region, int64_t& offset, bool* hasAlignmentsInRegion);
         uint64_t LookupLinearOffset(const BaiReferenceSummary& refSummary, const int& index);
 
     // internal BAI summary (create/load) methods