Removed index cache mode

[bamtools.git] / src / api / internal / BamReader_p.cpp

diff --git a/src/api/internal/BamReader_p.cpp b/src/api/internal/BamReader_p.cpp
index 393b168b74976a2f68b8d96dd47b39922be22d5d..dc6792fe8c210b685557809f06f9a993d8f41ebc 100644 (file)
--- a/src/api/internal/BamReader_p.cpp
+++ b/src/api/internal/BamReader_p.cpp
@@ -2,22 +2,21 @@
 // BamReader_p.cpp (c) 2009 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 7 October 2011 (DB)
+// Last modified: 10 October 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides the basic functionality for reading BAM files
 // ***************************************************************************
 
-#include <api/BamConstants.h>
-#include <api/BamReader.h>
-#include <api/IBamIODevice.h>
-#include <api/internal/BamDeviceFactory_p.h>
-#include <api/internal/BamException_p.h>
-#include <api/internal/BamHeader_p.h>
-#include <api/internal/BamRandomAccessController_p.h>
-#include <api/internal/BamReader_p.h>
-#include <api/internal/BamStandardIndex_p.h>
-#include <api/internal/BamToolsIndex_p.h>
-#include <api/internal/BgzfStream_p.h>
+#include "api/BamConstants.h"
+#include "api/BamReader.h"
+#include "api/IBamIODevice.h"
+#include "api/internal/BamDeviceFactory_p.h"
+#include "api/internal/BamException_p.h"
+#include "api/internal/BamHeader_p.h"
+#include "api/internal/BamRandomAccessController_p.h"
+#include "api/internal/BamReader_p.h"
+#include "api/internal/BamStandardIndex_p.h"
+#include "api/internal/BamToolsIndex_p.h"
 using namespace BamTools;
 using namespace BamTools::Internal;
 
@@ -448,11 +447,6 @@ void BamReaderPrivate::SetIndex(BamIndex* index) {
     m_randomAccessController.SetIndex(index);
 }
 
-// change the index caching behavior
-void BamReaderPrivate::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode) {
-    m_randomAccessController.SetIndexCacheMode(mode);
-}
-
 // sets current region & attempts to jump to it
 // returns success/failure
 bool BamReaderPrivate::SetRegion(const BamRegion& region) {