Cleaned up intra-API includes & moved version numbers to 2.0.0

[bamtools.git] / src / api / SamHeader.h

diff --git a/src/api/SamHeader.h b/src/api/SamHeader.h
index 707edbe760d23b3fc7ba0a4c52c571aa52ffb66a..50049947e627a29f5b077cb719b0c1a7874bb75a 100644 (file)
--- a/src/api/SamHeader.h
+++ b/src/api/SamHeader.h
@@ -2,7 +2,7 @@
 // SamHeader.h (c) 2010 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 6 October 2011 (DB)
+// Last modified: 10 October 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides direct read/write access to the SAM header data fields.
 // ***************************************************************************
@@ -10,10 +10,10 @@
 #ifndef SAM_HEADER_H
 #define SAM_HEADER_H
 
-#include <api/api_global.h>
-#include <api/SamProgramChain.h>
-#include <api/SamReadGroupDictionary.h>
-#include <api/SamSequenceDictionary.h>
+#include "api/api_global.h"
+#include "api/SamProgramChain.h"
+#include "api/SamReadGroupDictionary.h"
+#include "api/SamSequenceDictionary.h"
 #include <string>
 #include <vector>
 
@@ -35,22 +35,22 @@ struct API_EXPORT SamHeader {
     std::string ToString(void) const;                   // returns the printable, SAM-formatted header text
 
     // convenience query methods
-    bool HasVersion(void) const;       // returns true if header contains format version entry
-    bool HasSortOrder(void) const;     // returns true if header contains sort order entry
-    bool HasGroupOrder(void) const;    // returns true if header contains group order entry
-    bool HasSequences(void) const;     // returns true if header contains any sequence entries
-    bool HasReadGroups(void) const;    // returns true if header contains any read group entries
-    bool HasPrograms(void) const;      // returns true if header contains any program record entries
-    bool HasComments(void) const;      // returns true if header contains comments
+    bool HasVersion(void) const;     // returns true if header contains format version entry
+    bool HasSortOrder(void) const;   // returns true if header contains sort order entry
+    bool HasGroupOrder(void) const;  // returns true if header contains group order entry
+    bool HasSequences(void) const;   // returns true if header contains any sequence entries
+    bool HasReadGroups(void) const;  // returns true if header contains any read group entries
+    bool HasPrograms(void) const;    // returns true if header contains any program record entries
+    bool HasComments(void) const;    // returns true if header contains comments
 
     // --------------
     // data members
     // --------------
 
     // header metadata (@HD line)
-    std::string Version;               // VN:<Version>  *Required, if @HD record is present*
-    std::string SortOrder;             // SO:<SortOrder>
-    std::string GroupOrder;            // GO:<GroupOrder>
+    std::string Version;             // VN:<Version>  *Required, if @HD record is present*
+    std::string SortOrder;           // SO:<SortOrder>
+    std::string GroupOrder;          // GO:<GroupOrder>
 
     // header sequences (@SQ entries)
     SamSequenceDictionary Sequences;
@@ -64,6 +64,7 @@ struct API_EXPORT SamHeader {
     // header comments (@CO entries)
     std::vector<std::string> Comments;
 
+    // internal data
     private:
         mutable std::string m_errorString;
 };