Related to last commit - fixed another instance of '_WIN32'

[bamtools.git] / src / api / CMakeLists.txt

diff --git a/src/api/CMakeLists.txt b/src/api/CMakeLists.txt
index 951ba87e91699737bc542fcf69ef069254641225..a9dd0924a2925e7c661f71e6267b02489961b943 100644 (file)
--- a/src/api/CMakeLists.txt
+++ b/src/api/CMakeLists.txt
@@ -10,59 +10,74 @@ include_directories( ${BamTools_SOURCE_DIR}/src )
 
 # add compiler definitions 
 add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
+add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
+
+# fetch all internal source files
+add_subdirectory( internal )
+
+# make list of all API source files
+set( BamToolsAPISources
+        BamAlignment.cpp
+        BamMultiReader.cpp
+        BamReader.cpp
+        BamWriter.cpp
+        SamHeader.cpp
+        SamProgram.cpp
+        SamProgramChain.cpp
+        SamReadGroup.cpp
+        SamReadGroupDictionary.cpp
+        SamSequence.cpp
+        SamSequenceDictionary.cpp
+        ${InternalSources}
+)
 
 # create main BamTools API shared library
-add_library( BamTools SHARED
-             BamAlignment.cpp
-             BamIndex.cpp
-             BamMultiReader.cpp
-             BamReader.cpp
-             BamWriter.cpp
-             BGZF.cpp
-             internal/BamMultiReader_p.cpp
-             internal/BamReader_p.cpp
-             internal/BamStandardIndex_p.cpp
-             internal/BamToolsIndex_p.cpp
-             internal/BamWriter_p.cpp
-           )
-# set shared lib properties
-set_target_properties( BamTools PROPERTIES SOVERSION "0.9.1" )
-set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
+add_library( BamTools SHARED ${BamToolsAPISources} )
+set_target_properties( BamTools PROPERTIES
+                       SOVERSION "2.2.3"
+                       OUTPUT_NAME "bamtools" )
 
 # create main BamTools API static library
-add_library( BamTools-static STATIC
-             BamAlignment.cpp
-             BamIndex.cpp
-             BamMultiReader.cpp
-             BamReader.cpp
-             BamWriter.cpp
-             BGZF.cpp
-             internal/BamMultiReader_p.cpp
-             internal/BamReader_p.cpp
-             internal/BamStandardIndex_p.cpp
-             internal/BamToolsIndex_p.cpp
-             internal/BamWriter_p.cpp
-           )
-# set static lib properties
-set_target_properties( BamTools-static PROPERTIES OUTPUT_NAME "bamtools" )
-set_target_properties( BamTools-static PROPERTIES PREFIX "lib" )
+add_library( BamTools-static STATIC ${BamToolsAPISources} )
+set_target_properties( BamTools-static PROPERTIES 
+                       OUTPUT_NAME "bamtools" 
+                       PREFIX "lib" )
 
-# link libraries with zlib automatically
-target_link_libraries( BamTools z )
-target_link_libraries( BamTools-static z )
+# link libraries automatically with zlib (and Winsock2, if applicable)
+if( WIN32 )
+    set( APILibs z ws2_32 )
+else()
+    set( APILibs z )
+endif()
+
+target_link_libraries( BamTools ${APILibs} )
+target_link_libraries( BamTools-static ${APILibs} )
 
 # set library install destinations
-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools")
+install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
 install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
 
 # export API headers
 include(../ExportHeader.cmake)
 set(ApiIncludeDir "api")
-ExportHeader(APIHeaders api_global.h     ${ApiIncludeDir})
-ExportHeader(APIHeaders BamAlignment.h   ${ApiIncludeDir})
-ExportHeader(APIHeaders BamAux.h         ${ApiIncludeDir})
-ExportHeader(APIHeaders BamIndex.h       ${ApiIncludeDir})
-ExportHeader(APIHeaders BamMultiReader.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamReader.h      ${ApiIncludeDir})
-ExportHeader(APIHeaders BamWriter.h      ${ApiIncludeDir})
-ExportHeader(APIHeaders BGZF.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders api_global.h             ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlgorithms.h          ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlignment.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAux.h                 ${ApiIncludeDir})
+ExportHeader(APIHeaders BamConstants.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders BamIndex.h               ${ApiIncludeDir})
+ExportHeader(APIHeaders BamMultiReader.h         ${ApiIncludeDir})
+ExportHeader(APIHeaders BamReader.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders BamWriter.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders IBamIODevice.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamConstants.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamHeader.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgram.h             ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgramChain.h        ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroup.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequence.h            ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequenceDictionary.h  ${ApiIncludeDir})
+
+set( AlgorithmsIncludeDir "api/algorithms" )
+ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )