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ape.git
2013-04-02 paradisfinal commit for ape 3.0-8 master commit | commitdiff | tree | snapshot
2013-03-30 paradissome news for ape 3.0-8 commit | commitdiff | tree | snapshot
2013-03-18 paradismodified ace( method = ...) commit | commitdiff | tree | snapshot
2013-03-18 paradissome changes done before the HD failure of my laptop... commit | commitdiff | tree | snapshot
2013-02-13 paradiscorrects previous error when moving files commit | commitdiff | tree | snapshot
2013-02-13 paradisfix from Pierre Legendre commit | commitdiff | tree | snapshot
2013-02-09 paradisfix bug in prop.clades commit | commitdiff | tree | snapshot
2013-01-31 paradissome modifs for ape 3.0-8 commit | commitdiff | tree | snapshot
2013-01-21 paradismore corrections for ape 3.0-7 commit | commitdiff | tree | snapshot
2013-01-16 paradissome updates for ape 3.0-7 commit | commitdiff | tree | snapshot
2013-01-04 paradisnew chronos files and a bunch of various improvements commit | commitdiff | tree | snapshot
2012-12-27 paradisnew code for reading FASTA files commit | commitdiff | tree | snapshot
2012-12-19 paradisa few changes.... commit | commitdiff | tree | snapshot
2012-11-28 paradisadding the new function 'where' commit | commitdiff | tree | snapshot
2012-11-22 paradisfix in drop.tip() and new option in pic() commit | commitdiff | tree | snapshot
2012-10-22 paradisfinal corrections for ape 3.0-6 commit | commitdiff | tree | snapshot
2012-10-12 paradissome changes for ape 3.0-6 commit | commitdiff | tree | snapshot
2012-10-02 paradissome updates for ape 3.0-6 commit | commitdiff | tree | snapshot
2012-09-07 paradisupdated reorder.phylo.Rd commit | commitdiff | tree | snapshot
2012-09-03 paradisprovisional version of the new reorder.phylo() commit | commitdiff | tree | snapshot
2012-08-20 paradischanges in reorder(, "cladewise") commit | commitdiff | tree | snapshot
2012-08-16 paradisnew dist.nodes() with C code commit | commitdiff | tree | snapshot
2012-06-25 paradisbetter error-catching with ace() commit | commitdiff | tree | snapshot
2012-06-25 paradissmall moification on man page of as.phylo commit | commitdiff | tree | snapshot
2012-06-22 paradissome small changes commit | commitdiff | tree | snapshot
2012-05-03 paradisfix in read.dna and change in write.dna commit | commitdiff | tree | snapshot
2012-05-01 paradisvarious fixes in C files commit | commitdiff | tree | snapshot
2012-04-20 paradisfix in birthdeath() commit | commitdiff | tree | snapshot
2012-04-05 paradisfinal warp for ape 3.0-2 commit | commitdiff | tree | snapshot
2012-04-02 paradisbunch of fixes for ape 3.0-2 commit | commitdiff | tree | snapshot
2012-03-31 paradisvarious bug fixes commit | commitdiff | tree | snapshot
2012-03-24 paradisvarious bug fixes commit | commitdiff | tree | snapshot
2012-03-05 paradisa few fixes commit | commitdiff | tree | snapshot
2012-02-28 paradisnew alex() commit | commitdiff | tree | snapshot
2012-02-17 paradisvarious bug fixes since the release of ape 3.0 commit | commitdiff | tree | snapshot
2012-02-14 paradisa fix in cophyloplot() commit | commitdiff | tree | snapshot
2012-02-10 paradisfinal commit for ape 3.0 commit | commitdiff | tree | snapshot
2012-02-08 paradisnew files for ape 3.0 commit | commitdiff | tree | snapshot
2012-01-13 paradisfinal wrap for ape 3.0 commit | commitdiff | tree | snapshot
2011-12-17 paradisnew option 'rotate.tree' in plot.phylo() commit | commitdiff | tree | snapshot
2011-11-22 paradisfixes in mantel.test() and extract.clade() commit | commitdiff | tree | snapshot
2011-11-10 paradisa few changes... commit | commitdiff | tree | snapshot
2011-10-20 paradisbig update with files from Andrei commit | commitdiff | tree | snapshot
2011-09-26 paradisnew LTT plot functions + updated reference in yule... commit | commitdiff | tree | snapshot
2011-08-09 paradisfinal fixes for ape 2.7-3 commit | commitdiff | tree | snapshot
2011-08-05 paradisbug fix in root() commit | commitdiff | tree | snapshot
2011-08-04 paradisfix in c.multiPhylo() commit | commitdiff | tree | snapshot
2011-07-18 paradisnew method = "REML" in ace() with continuous traits commit | commitdiff | tree | snapshot
2011-07-15 paradisnew compute.brtime() + minor change in dist.topo.R commit | commitdiff | tree | snapshot
2011-07-07 paradisbug fix in chronopl() commit | commitdiff | tree | snapshot
2011-06-27 paradissome updates (including new CADM.global.Rd file) commit | commitdiff | tree | snapshot
2011-06-25 paradiscleaning of C files and update on simulation of OU... commit | commitdiff | tree | snapshot
2011-06-21 paradisvarious bug fixes commit | commitdiff | tree | snapshot
2011-06-16 paradisvarious updates for ape 2.7-2 (fixed) commit | commitdiff | tree | snapshot
2011-06-03 paradisvarious fixes and small news commit | commitdiff | tree | snapshot
2011-05-19 paradisfixing drop.tip and bionj commit | commitdiff | tree | snapshot
2011-04-18 paradischange file name ChangeLog to NEWS commit | commitdiff | tree | snapshot
2011-04-18 paradissmall update in rTrait.R (coercing parameters as double) commit | commitdiff | tree | snapshot
2011-03-29 paradisnew option 'draw' in plot.phylo() commit | commitdiff | tree | snapshot
2011-03-26 paradisfinal update for ape 2.7-1 commit | commitdiff | tree | snapshot
2011-03-23 paradisnew trex() + kronoviz() and bug fixing in identify... commit | commitdiff | tree | snapshot
2011-03-21 paradissome big fixes for ape 2.7-1 commit | commitdiff | tree | snapshot
2011-03-17 paradisfinal packing for ape 2.7 commit | commitdiff | tree | snapshot
2011-03-16 paradisa bunch of new stuff (see ChangeLog) commit | commitdiff | tree | snapshot
2011-03-16 paradisnew image.DNAbin() commit | commitdiff | tree | snapshot
2011-03-02 paradisfixes in bind.tree() commit | commitdiff | tree | snapshot
2011-03-01 paradisbug fixing in read.nexus() + Others.... commit | commitdiff | tree | snapshot
2011-02-17 paradisbug fixes in plot.phylo commit | commitdiff | tree | snapshot
2011-02-11 paradisa few bug fixes especially in plot.phylo() commit | commitdiff | tree | snapshot
2011-02-01 paradisbug fix in read.dna + change the default of tol in... commit | commitdiff | tree | snapshot
2010-12-24 paradissome bug fixes and '...' in rTrait*() commit | commitdiff | tree | snapshot
2010-12-14 paradisseveral fixes commit | commitdiff | tree | snapshot
2010-12-07 paradisbug fix in write.tree() commit | commitdiff | tree | snapshot
2010-11-30 paradisfix a bug in as.hclust.phylo + a few typos in man pages commit | commitdiff | tree | snapshot
2010-11-24 paradisvarious bug fixes commit | commitdiff | tree | snapshot
2010-11-18 paradisbug fix in mcmc.popsize() commit | commitdiff | tree | snapshot
2010-11-15 paradisnew pic.ortho() and varCompPhylip() + fix in dist.nodes() commit | commitdiff | tree | snapshot
2010-11-08 paradisbug fixed in write.tree commit | commitdiff | tree | snapshot
2010-11-04 paradisa bunch of modifications and fixes commit | commitdiff | tree | snapshot
2010-11-01 paradisfinal version for ape 2.6-1 commit | commitdiff | tree | snapshot
2010-10-20 paradisnew speciesTree() commit | commitdiff | tree | snapshot
2010-10-19 paradisa few changes and one bug fix commit | commitdiff | tree | snapshot
2010-10-07 paradiscorrecting a bug in write.tree + error in MPR examples commit | commitdiff | tree | snapshot
2010-10-07 paradisa few changes.... commit | commitdiff | tree | snapshot
2010-09-27 paradisadding bd.time commit | commitdiff | tree | snapshot
2010-09-16 paradismany changes! commit | commitdiff | tree | snapshot
2010-07-21 paradisimprovements to compar.gee + bug fix in extract.clade commit | commitdiff | tree | snapshot
2010-07-19 paradisBOTHlabels(... hozir = TRUE) commit | commitdiff | tree | snapshot
2010-07-13 paradisnew as.list.DNAbin commit | commitdiff | tree | snapshot
2010-06-14 paradissmall changes in PGLS.R commit | commitdiff | tree | snapshot
2010-05-27 paradisnew mixedFontLabel() + bug fix in rTraitCont.c commit | commitdiff | tree | snapshot
2010-05-25 paradisnew operators for "multiPhylo" + fixed small bug in... commit | commitdiff | tree | snapshot
2010-05-17 paradisvarious changes to DNAbin functions + new labels.DNAbin() commit | commitdiff | tree | snapshot
2010-05-17 paradisremoving NPRS + change bind.tree.Rd to avoid crash... commit | commitdiff | tree | snapshot
2010-05-06 paradis2nd try!! commit | commitdiff | tree | snapshot
2010-04-24 paradisnew faster nj.c commit | commitdiff | tree | snapshot
2010-04-07 paradisremoving evolve.phylo + bug fix in as.phylo.hclust commit | commitdiff | tree | snapshot
2010-04-02 paradisvarious corrections commit | commitdiff | tree | snapshot
2010-03-19 paradisfixing various bugs + news in cophyloplot commit | commitdiff | tree | snapshot
2010-03-16 paradisfixes in compar.ou and plot.phylo + new bind.tree commit | commitdiff | tree | snapshot
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Local fork of ape (analysis of ecology)