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2011-12-17	paradis	new option 'rotate.tree' in plot.phylo()	commit \| commitdiff \| tree
2011-11-22	paradis	fixes in mantel.test() and extract.clade()	commit \| commitdiff \| tree
2011-11-10	paradis	a few changes...	commit \| commitdiff \| tree
2011-10-20	paradis	big update with files from Andrei	commit \| commitdiff \| tree
2011-09-26	paradis	new LTT plot functions + updated reference in yule...	commit \| commitdiff \| tree
2011-08-09	paradis	final fixes for ape 2.7-3	commit \| commitdiff \| tree
2011-08-05	paradis	bug fix in root()	commit \| commitdiff \| tree
2011-08-04	paradis	fix in c.multiPhylo()	commit \| commitdiff \| tree
2011-07-18	paradis	new method = "REML" in ace() with continuous traits	commit \| commitdiff \| tree
2011-07-15	paradis	new compute.brtime() + minor change in dist.topo.R	commit \| commitdiff \| tree
2011-07-07	paradis	bug fix in chronopl()	commit \| commitdiff \| tree
2011-06-27	paradis	some updates (including new CADM.global.Rd file)	commit \| commitdiff \| tree
2011-06-25	paradis	cleaning of C files and update on simulation of OU...	commit \| commitdiff \| tree
2011-06-21	paradis	various bug fixes	commit \| commitdiff \| tree
2011-06-16	paradis	various updates for ape 2.7-2 (fixed)	commit \| commitdiff \| tree
2011-06-03	paradis	various fixes and small news	commit \| commitdiff \| tree
2011-05-19	paradis	fixing drop.tip and bionj	commit \| commitdiff \| tree
2011-04-18	paradis	change file name ChangeLog to NEWS	commit \| commitdiff \| tree
2011-04-18	paradis	small update in rTrait.R (coercing parameters as double)	commit \| commitdiff \| tree
2011-03-29	paradis	new option 'draw' in plot.phylo()	commit \| commitdiff \| tree
2011-03-26	paradis	final update for ape 2.7-1	commit \| commitdiff \| tree
2011-03-23	paradis	new trex() + kronoviz() and bug fixing in identify...	commit \| commitdiff \| tree
2011-03-21	paradis	some big fixes for ape 2.7-1	commit \| commitdiff \| tree
2011-03-17	paradis	final packing for ape 2.7	commit \| commitdiff \| tree
2011-03-16	paradis	a bunch of new stuff (see ChangeLog)	commit \| commitdiff \| tree
2011-03-16	paradis	new image.DNAbin()	commit \| commitdiff \| tree
2011-03-02	paradis	fixes in bind.tree()	commit \| commitdiff \| tree
2011-03-01	paradis	bug fixing in read.nexus() + Others....	commit \| commitdiff \| tree
2011-02-17	paradis	bug fixes in plot.phylo	commit \| commitdiff \| tree
2011-02-11	paradis	a few bug fixes especially in plot.phylo()	commit \| commitdiff \| tree
2011-02-01	paradis	bug fix in read.dna + change the default of tol in...	commit \| commitdiff \| tree
2010-12-24	paradis	some bug fixes and '...' in rTrait*()	commit \| commitdiff \| tree
2010-12-14	paradis	several fixes	commit \| commitdiff \| tree
2010-12-07	paradis	bug fix in write.tree()	commit \| commitdiff \| tree
2010-11-30	paradis	fix a bug in as.hclust.phylo + a few typos in man pages	commit \| commitdiff \| tree
2010-11-24	paradis	various bug fixes	commit \| commitdiff \| tree
2010-11-18	paradis	bug fix in mcmc.popsize()	commit \| commitdiff \| tree
2010-11-15	paradis	new pic.ortho() and varCompPhylip() + fix in dist.nodes()	commit \| commitdiff \| tree
2010-11-08	paradis	bug fixed in write.tree	commit \| commitdiff \| tree
2010-11-04	paradis	a bunch of modifications and fixes	commit \| commitdiff \| tree
2010-11-01	paradis	final version for ape 2.6-1	commit \| commitdiff \| tree
2010-10-20	paradis	new speciesTree()	commit \| commitdiff \| tree
2010-10-19	paradis	a few changes and one bug fix	commit \| commitdiff \| tree
2010-10-07	paradis	correcting a bug in write.tree + error in MPR examples	commit \| commitdiff \| tree
2010-10-07	paradis	a few changes....	commit \| commitdiff \| tree
2010-09-27	paradis	adding bd.time	commit \| commitdiff \| tree
2010-09-16	paradis	many changes!	commit \| commitdiff \| tree
2010-07-21	paradis	improvements to compar.gee + bug fix in extract.clade	commit \| commitdiff \| tree
2010-07-19	paradis	BOTHlabels(... hozir = TRUE)	commit \| commitdiff \| tree
2010-07-13	paradis	new as.list.DNAbin	commit \| commitdiff \| tree
2010-06-14	paradis	small changes in PGLS.R	commit \| commitdiff \| tree
2010-05-27	paradis	new mixedFontLabel() + bug fix in rTraitCont.c	commit \| commitdiff \| tree
2010-05-25	paradis	new operators for "multiPhylo" + fixed small bug in...	commit \| commitdiff \| tree
2010-05-17	paradis	various changes to DNAbin functions + new labels.DNAbin()	commit \| commitdiff \| tree
2010-05-17	paradis	removing NPRS + change bind.tree.Rd to avoid crash...	commit \| commitdiff \| tree
2010-05-06	paradis	2nd try!!	commit \| commitdiff \| tree
2010-04-24	paradis	new faster nj.c	commit \| commitdiff \| tree
2010-04-07	paradis	removing evolve.phylo + bug fix in as.phylo.hclust	commit \| commitdiff \| tree
2010-04-02	paradis	various corrections	commit \| commitdiff \| tree
2010-03-19	paradis	fixing various bugs + news in cophyloplot	commit \| commitdiff \| tree
2010-03-16	paradis	fixes in compar.ou and plot.phylo + new bind.tree	commit \| commitdiff \| tree
2010-03-13	paradis	adding stree.Rd	commit \| commitdiff \| tree
2010-03-13	paradis	few corrections and fixes	commit \| commitdiff \| tree
2010-02-03	paradis	fix rTraitDisc	commit \| commitdiff \| tree
2010-02-01	paradis	final packaging for ape 2.5!	commit \| commitdiff \| tree
2010-01-26	paradis	updating ChangeLog file	commit \| commitdiff \| tree
2010-01-25	paradis	data for lmorigin	commit \| commitdiff \| tree
2010-01-25	paradis	adding lmorigin + final correction to dist.topo	commit \| commitdiff \| tree
2010-01-23	paradis	new dist.topo (to be finished) and modified multi2di	commit \| commitdiff \| tree
2010-01-22	paradis	new code from Pierre Legendre	commit \| commitdiff \| tree
2010-01-15	paradis	add delta.plot + clarify doc in write.tree.Rd	commit \| commitdiff \| tree
2010-01-12	paradis	new files for trait simulations	commit \| commitdiff \| tree
2010-01-04	paradis	various changes...	commit \| commitdiff \| tree
2009-12-16	paradis	small changed in add.scale.bar	commit \| commitdiff \| tree
2009-11-21	paradis	last changes for ape 2.4-1	commit \| commitdiff \| tree
2009-11-10	paradis	removing plot.phylo.coor (definitely)	commit \| commitdiff \| tree
2009-11-10	paradis	again...........	commit \| commitdiff \| tree
2009-11-03	paradis	changed rtree and rcoal	commit \| commitdiff \| tree
2009-10-28	paradis	some bug fixes	commit \| commitdiff \| tree
2009-10-05	paradis	final changes for ape 2.4 including removing mlphylo!	commit \| commitdiff \| tree
2009-10-02	paradis	various changes and fixes	commit \| commitdiff \| tree
2009-09-30	paradis	final plot.phylo and change to BOTHlabels() from Janet...	commit \| commitdiff \| tree
2009-09-24	paradis	finally the new plot.phylo...	commit \| commitdiff \| tree
2009-09-18	paradis	removing files that have moved to pegas	commit \| commitdiff \| tree
2009-09-18	paradis	moved functions from ape to pegas -> ape 2.4	commit \| commitdiff \| tree
2009-09-16	paradis	bug fix in seg.sites + new option in base.freq	commit \| commitdiff \| tree
2009-09-14	paradis	typo fixing...	commit \| commitdiff \| tree
2009-09-09	paradis	a collection of bug fixes	commit \| commitdiff \| tree
2009-07-27	paradis	fixing write.nexus()	commit \| commitdiff \| tree
2009-07-27	paradis	fixing zoom()	commit \| commitdiff \| tree
2009-07-23	paradis	fixing add.scale.bar()	commit \| commitdiff \| tree
2009-07-20	paradis	faster nj()!!!	commit \| commitdiff \| tree
2009-07-14	paradis	fixing nj() with many 0 distances	commit \| commitdiff \| tree
2009-07-07	paradis	several bug fixes while in JKT	commit \| commitdiff \| tree
2009-06-23	paradis	fixes for ape 2.3-1	commit \| commitdiff \| tree
2009-06-23	paradis	fix a bug in drop.tip + add new option 'rooted'	commit \| commitdiff \| tree
2009-06-19	paradis	new is.monophyletic() + various changes/fixes	commit \| commitdiff \| tree
2009-06-12	paradis	removed klastorin()	commit \| commitdiff \| tree
2009-06-10	paradis	improved ace()	commit \| commitdiff \| tree
2009-06-09	paradis	fixed null model in yule.cov + various things	commit \| commitdiff \| tree
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