From 68231d0918c593b45fdfa419c6a58e10b1c993b9 Mon Sep 17 00:00:00 2001
From: paradis <paradis@6e262413-ae40-0410-9e79-b911bd7a66b7>
Date: Sat, 13 Mar 2010 13:47:32 +0000
Subject: [PATCH] adding stree.Rd

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@113 6e262413-ae40-0410-9e79-b911bd7a66b7
---
 man/stree.Rd | 45 +++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)
 create mode 100644 man/stree.Rd

diff --git a/man/stree.Rd b/man/stree.Rd
new file mode 100644
index 0000000..fc0e719
--- /dev/null
+++ b/man/stree.Rd
@@ -0,0 +1,45 @@
+\name{stree}
+\alias{stree}
+\title{Generates Systematic Regular Trees}
+\usage{
+stree(n, type = "star", tip.label = NULL)
+}
+\arguments{
+  \item{n}{an integer giving the number of tips in the tree.}
+  \item{type}{a character string specifying the type of tree to
+    generate; four choices are possible: \code{"star"},
+    \code{"balanced"}, \code{"left"}, \code{"right"}, or any unambiguous
+    abbreviation of these.}
+  \item{tip.label}{a character vector giving the tip labels; if not
+    specified, the tips "t1", "t2", ..., are given.}
+}
+\description{
+  This function generates trees with regular shapes.
+}
+\details{
+  The types of trees generated are:
+
+  \itemize{
+    \item{``star''}{a star (or comb) tree with a single internal node.}
+    \item{``balanced''}{a fully balanced dichotmous rooted tree;
+      \code{n} must be of power of 2 (2, 4, 8, \dots).}
+    \item{``left''}{a fully unbalanced rooted tree where the largest
+      clade is on the left-hand side when the tree is plotted upwards.}
+    \item{``right''}{same than above but in the other direction.}
+  }
+}
+\value{
+  An object of class \code{"phylo"}.
+}
+\author{Emmanuel Paradis}
+\seealso{
+  \code{\link{compute.brlen}}, \code{\link{rtree}}
+}
+\examples{
+layout(matrix(1:4, 2, 2))
+plot(stree(100))
+plot(stree(128, "balanced"))
+plot(stree(100, "left"))
+plot(stree(100, "right"))
+}
+\keyword{datagen}
-- 
2.39.2