new files by Damien + a few bug fixes
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@25
6e262413-ae40-0410-9e79-
b911bd7a66b7
removed the print(node.labels)
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@24
6e262413-ae40-0410-9e79-
b911bd7a66b7
improved chronopl
bug fixes in read.dna & plot.phylo
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@23
6e262413-ae40-0410-9e79-
b911bd7a66b7
fixed bugs in multi2di and di2multi + code and doc clean-up
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@22
6e262413-ae40-0410-9e79-
b911bd7a66b7
code clean-up in DNA.R
fixed ace() with GLS
added some links in the man pages
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@21
6e262413-ae40-0410-9e79-
b911bd7a66b7
update for ape 2.1-2
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@20
6e262413-ae40-0410-9e79-
b911bd7a66b7
fixing a few bugs...
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@19
6e262413-ae40-0410-9e79-
b911bd7a66b7
improved root()
changed plot.phylo so that last_plot.phylo is now
in a proper environment, no in .GlobalEnv
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@18
6e262413-ae40-0410-9e79-
b911bd7a66b7
added "DUP=FALSE, NAOK=TRUE" to .C in DNA.R
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@17
6e262413-ae40-0410-9e79-
b911bd7a66b7
various updates...[21~
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@16
6e262413-ae40-0410-9e79-
b911bd7a66b7
fix a bug in nuc.div()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@15
6e262413-ae40-0410-9e79-
b911bd7a66b7
conversion tree -> phylo
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@14
6e262413-ae40-0410-9e79-
b911bd7a66b7
stabler and faster C code for ME and BIONJ
package loading now silent and/or when needed
fix small bug in identify.phylo
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@13
6e262413-ae40-0410-9e79-
b911bd7a66b7
new function rmtree
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@12
6e262413-ae40-0410-9e79-
b911bd7a66b7
current 2.1 release
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@11
6e262413-ae40-0410-9e79-
b911bd7a66b7