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paradis [Wed, 18 Jun 2008 05:42:34 +0000 (05:42 +0000)]
bugs fixing in mlphylo()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@35
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Thu, 12 Jun 2008 07:37:31 +0000 (07:37 +0000)]
bug fix in root()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@34
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Mon, 9 Jun 2008 23:55:32 +0000 (23:55 +0000)]
improved unique.multiPhylo()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@33
6e262413-ae40-0410-9e79-
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paradis [Sun, 8 Jun 2008 06:46:38 +0000 (06:46 +0000)]
adding del.gaps()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@32
6e262413-ae40-0410-9e79-
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paradis [Thu, 8 May 2008 05:18:09 +0000 (05:18 +0000)]
doc for corBlomberg
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@31
6e262413-ae40-0410-9e79-
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paradis [Thu, 8 May 2008 05:14:48 +0000 (05:14 +0000)]
final wrap of ape 2.2
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@30
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Tue, 6 May 2008 13:40:20 +0000 (13:40 +0000)]
cosmetic modif on rtree() + last (?) changes to Damien's functions
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@29
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Thu, 24 Apr 2008 19:25:35 +0000 (19:25 +0000)]
fix bug in seg.sites + improved Damien's man pages
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@28
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Fri, 18 Apr 2008 10:02:18 +0000 (10:02 +0000)]
added corPagel + gave version # 2.2
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@27
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Thu, 17 Apr 2008 19:51:15 +0000 (19:51 +0000)]
fix on drop.tip()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@26
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Thu, 17 Apr 2008 12:46:51 +0000 (12:46 +0000)]
new files by Damien + a few bug fixes
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@25
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Thu, 10 Apr 2008 18:30:02 +0000 (18:30 +0000)]
removed the print(node.labels)
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@24
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Mon, 31 Mar 2008 13:06:28 +0000 (13:06 +0000)]
improved chronopl
bug fixes in read.dna & plot.phylo
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@23
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Mon, 17 Mar 2008 07:43:39 +0000 (07:43 +0000)]
fixed bugs in multi2di and di2multi + code and doc clean-up
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@22
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Tue, 11 Mar 2008 12:54:40 +0000 (12:54 +0000)]
code clean-up in DNA.R
fixed ace() with GLS
added some links in the man pages
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@21
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Mon, 3 Mar 2008 17:29:31 +0000 (17:29 +0000)]
update for ape 2.1-2
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@20
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Wed, 27 Feb 2008 16:07:52 +0000 (16:07 +0000)]
fixing a few bugs...
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@19
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Wed, 13 Feb 2008 16:32:14 +0000 (16:32 +0000)]
improved root()
changed plot.phylo so that last_plot.phylo is now
in a proper environment, no in .GlobalEnv
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@18
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Fri, 8 Feb 2008 14:12:44 +0000 (14:12 +0000)]
added "DUP=FALSE, NAOK=TRUE" to .C in DNA.R
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@17
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Thu, 7 Feb 2008 12:42:57 +0000 (12:42 +0000)]
various updates...[21~
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@16
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Mon, 21 Jan 2008 13:58:58 +0000 (13:58 +0000)]
fix a bug in nuc.div()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@15
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Mon, 14 Jan 2008 13:34:37 +0000 (13:34 +0000)]
conversion tree -> phylo
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@14
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Mon, 14 Jan 2008 13:33:26 +0000 (13:33 +0000)]
stabler and faster C code for ME and BIONJ
package loading now silent and/or when needed
fix small bug in identify.phylo
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@13
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Tue, 8 Jan 2008 11:57:26 +0000 (11:57 +0000)]
new function rmtree
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@12
6e262413-ae40-0410-9e79-
b911bd7a66b7
paradis [Fri, 4 Jan 2008 18:15:23 +0000 (18:15 +0000)]
current 2.1 release
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@11
6e262413-ae40-0410-9e79-
b911bd7a66b7
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