git.donarmstrong.com Git

paradis [Mon, 17 Mar 2008 07:43:39 +0000 (07:43 +0000)]

fixed bugs in multi2di and di2multi + code and doc clean-up

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@22 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Tue, 11 Mar 2008 12:54:40 +0000 (12:54 +0000)]

code clean-up in DNA.R
fixed ace() with GLS
added some links in the man pages

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@21 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Mon, 3 Mar 2008 17:29:31 +0000 (17:29 +0000)]

update for ape 2.1-2

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@20 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Wed, 27 Feb 2008 16:07:52 +0000 (16:07 +0000)]

fixing a few bugs...

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@19 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Wed, 13 Feb 2008 16:32:14 +0000 (16:32 +0000)]

improved root()
changed plot.phylo so that last_plot.phylo is now
in a proper environment, no in .GlobalEnv

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@18 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Fri, 8 Feb 2008 14:12:44 +0000 (14:12 +0000)]

added "DUP=FALSE, NAOK=TRUE" to .C in DNA.R

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@17 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Thu, 7 Feb 2008 12:42:57 +0000 (12:42 +0000)]

various updates...[21~

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@16 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Mon, 21 Jan 2008 13:58:58 +0000 (13:58 +0000)]

fix a bug in nuc.div()

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@15 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Mon, 14 Jan 2008 13:34:37 +0000 (13:34 +0000)]

conversion tree -> phylo

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@14 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Mon, 14 Jan 2008 13:33:26 +0000 (13:33 +0000)]

stabler and faster C code for ME and BIONJ
package loading now silent and/or when needed
fix small bug in identify.phylo

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@13 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Tue, 8 Jan 2008 11:57:26 +0000 (11:57 +0000)]

new function rmtree

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@12 6e262413-ae40-0410-9e79-b911bd7a66b7

commit | commitdiff | tree

paradis [Fri, 4 Jan 2008 18:15:23 +0000 (18:15 +0000)]

current 2.1 release

git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@11 6e262413-ae40-0410-9e79-b911bd7a66b7

Local fork of ape (analysis of ecology)

RSS Atom