bug fix in seg.sites + new option in base.freq

[ape.git] / man / seg.sites.Rd

diff --git a/man/seg.sites.Rd b/man/seg.sites.Rd
index 19efd2b1b31d7d51da2b0034ad21f2dd75894823..8f97c52ec16e6b98c70da739059b1f9d29748d5f 100644 (file)
--- a/man/seg.sites.Rd
+++ b/man/seg.sites.Rd
@@ -15,10 +15,11 @@ seg.sites(x)
 }
 \details{
   If the sequences are in a list, all the sequences must be of the same
-  length.
+  length. Ambiguous nucleotides are ignored.
 }
 \value{
-  A numeric vector giving the indices of the segregating sites.
+  A numeric (integer) vector giving the indices of the segregating
+  sites.
 }
 \author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
 \note{