bug fix in read.dna + change the default of tol in drop.fossil

[ape.git] / man / rlineage.Rd

diff --git a/man/rlineage.Rd b/man/rlineage.Rd
index dd36c0fed441ac17ba16edfe949f753b8b40fb9a..5b2056808ebfd31e8e1070fb82e15da3004c4cd2 100644 (file)
--- a/man/rlineage.Rd
+++ b/man/rlineage.Rd
@@ -15,7 +15,7 @@ rlineage(birth, death, Tmax = 50, BIRTH = NULL,
          DEATH = NULL, eps = 1e-6)
 rbdtree(birth, death, Tmax = 50, BIRTH = NULL,
         DEATH = NULL, eps = 1e-6)
-drop.fossil(phy, tol = 0)
+drop.fossil(phy, tol = 1e-8)
 }
 \arguments{
   \item{birth, death}{a numeric value or a (vectorized) function
@@ -49,8 +49,8 @@ drop.fossil(phy, tol = 0)
   process. \emph{Annals of Mathematical Statistics}, \bold{19}, 1--15.
 
   Paradis, E. (2010) Time-dependent speciation and extinction from
-  phylogenies: a least squares approach. (under revision)
-  %\emph{Evolution}, \bold{59}, 1--12.
+  phylogenies: a least squares approach. \emph{Evolution} (in press)
+  %, \bold{59}, 1--12.
 }
 \author{Emmanuel Paradis}
 \seealso{