new code for reading FASTA files

[ape.git] / man / read.dna.Rd

diff --git a/man/read.dna.Rd b/man/read.dna.Rd
index 2863ad85c32ec8c47efeca1fa852bf57a5a14315..19bab40bf68733b013ca7d6b2fa893632d6a9e1e 100644 (file)
--- a/man/read.dna.Rd
+++ b/man/read.dna.Rd
@@ -1,10 +1,12 @@
 \name{read.dna}
 \alias{read.dna}
+\alias{read.FASTA}
 \title{Read DNA Sequences in a File}
 \usage{
 read.dna(file, format = "interleaved", skip = 0,
          nlines = 0, comment.char = "#",
          as.character = FALSE, as.matrix = NULL)
+read.FASTA(file)
 }
 \arguments{
   \item{file}{a file name specified by either a variable of mode character,
@@ -79,6 +81,8 @@ read.dna(file, format = "interleaved", skip = 0,
   a matrix or a list (if \code{format = "fasta"}) of DNA sequences
   stored in binary format, or of mode character (if \code{as.character =
     "TRUE"}).
+
+  \code{read.FASTA} always returns a list.
 }
 \references{
   Anonymous. FASTA format description.