bunch of fixes for ape 3.0-2

[ape.git] / man / njs.Rd

diff --git a/man/njs.Rd b/man/njs.Rd
index 04bafb97fe6a7ab6c3c086c926c045fb6b854372..b400e26784d851a2e269fc5793c72c5c54af20e9 100644 (file)
--- a/man/njs.Rd
+++ b/man/njs.Rd
@@ -30,4 +30,16 @@ bionjs(X, fs = 15)
   \url{http://www.biomedcentral.com/1471-2105/9/166}
 }
 \author{Andrei Popescu \email{niteloserpopescu@gmail.com}}
+\seealso{
+  \code{\link{nj}}, \code{\link{bionj}}, \code{\link{triangMtds}}
+}
+\examples{
+data(woodmouse)
+d <- dist.dna(woodmouse)
+dm <- d
+dm[sample(length(dm), size = 3)] <- NA
+dist.topo(njs(dm), nj(d)) # often 0
+dm[sample(length(dm), size = 10)] <- NA
+dist.topo(njs(dm), nj(d)) # sometimes 0
+}
 \keyword{models}