adding bd.time

[ape.git] / man / ltt.plot.Rd

diff --git a/man/ltt.plot.Rd b/man/ltt.plot.Rd
index 9d0b9292ac5605493ba46ea3f5f57ba1d3c71f8d..6f09500b9847a27f5a8b2ddb0a40414941b2643f 100644 (file)
--- a/man/ltt.plot.Rd
+++ b/man/ltt.plot.Rd
@@ -6,8 +6,8 @@
 \usage{
 ltt.plot(phy, xlab = "Time", ylab = "N", ...)
 ltt.lines(phy, ...)
-mltt.plot(phy, ..., dcol = TRUE, dlty = FALSE,
-          legend = TRUE, xlab = "Time", ylab = "N")
+mltt.plot(phy, ..., dcol = TRUE, dlty = FALSE, legend = TRUE,
+          xlab = "Time", ylab = "N", log = "")
 }
 \arguments{
   \item{phy}{an object of class \code{"phylo"}; this could be an object
@@ -15,7 +15,7 @@ mltt.plot(phy, ..., dcol = TRUE, dlty = FALSE,
   \item{xlab}{a character string (or a variable of mode character)
     giving the label for the x-axis (default is "Time").}
   \item{ylab}{idem for the y-axis (default is "N").}
-  \item{...}{in the cases of \code{ltt.plot()} and \code{ltt.lines()}
+  \item{\dots}{in the cases of \code{ltt.plot()} and \code{ltt.lines()}
     these are further (graphical) arguments to be passed to
     \code{plot()} or \code{lines()}, respectively (see \code{Details:}
     on how to transform the axes); in the case \code{mltt.plot()} these
@@ -27,6 +27,9 @@ mltt.plot(phy, ..., dcol = TRUE, dlty = FALSE,
     \code{FALSE}).}
   \item{legend}{a logical specifying whether a legend should be
     plotted.}
+  \item{log}{a character string specifying which axis(es) to be
+    log-transformed; must be one of the followings: \code{""},
+    \code{"x"}, \code{"y"}, or \code{"xy"}.}
 }
 \description{
   These functions plot, on the current graphical device, the minimum
@@ -66,10 +69,11 @@ mltt.plot(phy, ..., dcol = TRUE, dlty = FALSE,
     Transactions of the Royal Society of London. Series B. Biological
     Sciences}, \bold{349}, 25--31.
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \seealso{
   \code{\link{skyline}}, \code{\link{branching.times}},
-  \code{\link{birthdeath}}, \code{\link{bd.ext}}, \code{\link{yule.cov}}
+  \code{\link{birthdeath}}, \code{\link{bd.ext}},
+  \code{\link{yule.cov}}, \code{\link{bd.time}}
   \code{\link[graphics]{plot}} for the basic plotting function in R
 }
 \examples{