some updates for ape 3.0-6

[ape.git] / man / ape-internal.Rd

diff --git a/man/ape-internal.Rd b/man/ape-internal.Rd
index f4e834cf5729270f2b4483442311b237e1a394fe..c923093a662be4fd910b4e55874e946afb12a773 100644 (file)
--- a/man/ape-internal.Rd
+++ b/man/ape-internal.Rd
@@ -8,26 +8,11 @@
 \alias{mant.zstat}
 \alias{lower.triang}
 \alias{clado.build}
-\alias{getDurations}
-\alias{getEdgeLengths}
-\alias{getExternalParams}
-\alias{getNEdges}
-\alias{getNFreeParams}
-\alias{getRates}
-\alias{objFuncLogScale}
-\alias{optimTree}
-\alias{phylogram}
-\alias{prepareTree}
-\alias{setTree}
-\alias{nEdges}
-\alias{nNodes}
 \alias{phylogram.plot}
 \alias{cladogram.plot}
 \alias{circular.plot}
 \alias{unrooted.plot}
 \alias{unrooted.xy}
-\alias{node.height}
-\alias{node.height.clado}
 \alias{birth.step}
 \alias{death.step}
 \alias{ht.move}
@@ -35,17 +20,17 @@
 \alias{pos.move}
 \alias{BOTHlabels}
 \alias{chronopl.cv}
-\alias{prepareDNA}
 \alias{floating.pie.asp}
 \alias{checkLabel}
 \alias{getMRCA}
 \alias{plotCophylo2}
 \alias{plotPhyloCoor}
+\alias{integrateTrapeze}
+\alias{CDF.birth.death}
+\alias{postprocess.prop.part}
+\alias{ONEwise}
 \title{Internal Ape Functions}
 \description{
   Internal \pkg{ape} functions.
 }
-\note{
-  These are not to be called by the user (unless you know what you're doing).
-}
 \keyword{internal}