new pic.ortho() and varCompPhylip() + fix in dist.nodes()

[ape.git] / man / ape-internal.Rd

diff --git a/man/ape-internal.Rd b/man/ape-internal.Rd
index 0206ccb24a653bb87c2ebc347f3735d28733d4a1..73d53e6cf85a1c829dc85cff67aaa6d46e4aeba5 100644 (file)
--- a/man/ape-internal.Rd
+++ b/man/ape-internal.Rd
@@ -1,5 +1,4 @@
 \name{ape-internal}
-\alias{klastorin}
 \alias{tree.build}
 \alias{f.cherry.yule}
 \alias{f.cherry.uniform}
@@ -9,19 +8,6 @@
 \alias{mant.zstat}
 \alias{lower.triang}
 \alias{clado.build}
-\alias{getDurations}
-\alias{getEdgeLengths}
-\alias{getExternalParams}
-\alias{getNEdges}
-\alias{getNFreeParams}
-\alias{getRates}
-\alias{objFuncLogScale}
-\alias{optimTree}
-\alias{phylogram}
-\alias{prepareTree}
-\alias{setTree}
-\alias{nEdges}
-\alias{nNodes}
 \alias{phylogram.plot}
 \alias{cladogram.plot}
 \alias{circular.plot}
@@ -36,15 +22,16 @@
 \alias{pos.move}
 \alias{BOTHlabels}
 \alias{chronopl.cv}
-\alias{prepareDNA}
 \alias{floating.pie.asp}
 \alias{checkLabel}
 \alias{getMRCA}
 \alias{plotCophylo2}
 \alias{plotPhyloCoor}
+\alias{integrateTrapeze}
+\alias{CDF.birth.death}
 \title{Internal Ape Functions}
 \description{
-  Internal ape functions.
+  Internal \pkg{ape} functions.
 }
 \note{
   These are not to be called by the user (unless you know what you're doing).