removing NPRS + change bind.tree.Rd to avoid crash during R CMD check ape

[ape.git] / man / ape-defunct.Rd

diff --git a/man/ape-defunct.Rd b/man/ape-defunct.Rd
index 346c24a1d1e76efadeb025e16ac240da57b7dec8..95dc2ec684cfbd02230537e878e4d89c4756a449 100644 (file)
--- a/man/ape-defunct.Rd
+++ b/man/ape-defunct.Rd
@@ -12,6 +12,9 @@
 \alias{theta.s}
 \alias{evolve.phylo}
 \alias{plot.ancestral}
+\alias{chronogram}
+\alias{ratogram}
+\alias{NPRS.criterion}
 \title{Defunct Ape Functions}
 \description{
   These functions have been removed from \pkg{ape} or moved to another
@@ -30,6 +33,9 @@ theta.k(x, n = NULL, k = NULL)
 theta.s(s, n, variance = FALSE)
 evolve.phylo(phy, value, var)
 plot.ancestral(...)
+chronogram(...)
+ratogram(...)
+NPRS.criterion(...)
 }
 \details{
   \code{klastorin} has been removed because it does not seem to be used
@@ -44,6 +50,9 @@ plot.ancestral(...)
   and \code{theta.s} have been moved to \pkg{pegas}.
 
   \code{evolve.phylo} and \code{plot.ancestral} have been deprecated by
-  the new function \link{\code{rTraitCont}}.
+  the new function \code{\link{rTraitCont}}.
+
+  \code{chronogram}, \code{ratogram}, and \code{NPRS.criterion} have
+  ceased to be maintained: consider using \code{\link{chronopl}}.
 }
 \keyword{internal}