-## write.nexus.R (2012-02-09)
+## write.nexus.R (2012-03-02)
## Write Tree File in Nexus Format
for (i in 1:ntree) {
if (class(obj[[i]]) != "phylo") next
- if (is.rooted(obj[[i]]))
- cat("\tTREE *,", title[i], "= [&R] ", file = file, append = TRUE)
- else cat("\tTREE *", title[i], "= [&U] ", file = file, append = TRUE)
+ root.tag <- if (is.rooted(obj[[i]])) "= [&R] " else "= [&U] "
+ cat("\tTREE *", title[i], root.tag, file = file, append = TRUE)
cat(write.tree(obj[[i]], file = ""),
"\n", sep = "", file = file, append = TRUE)
}