-## summary.phylo.R (2008-04-22)
+## summary.phylo.R (2009-05-10)
## Print Summary of a Phylogeny
-## Copyright 2003-2008 Emmanuel Paradis, and 2006 Ben Bolker
+## Copyright 2003-2009 Emmanuel Paradis, and 2006 Ben Bolker
## This file is part of the R-package `ape'.
## See the file ../COPYING for licensing issues.
Ntip <- function(phy)
{
- if (class(phy) != "phylo")
- stop('object "phy" is not of class "phylo"')
+ if (!inherits(phy, "phylo"))
+ stop('object "phy" is not of class "phylo"')
length(phy$tip.label)
}
Nnode <- function(phy, internal.only = TRUE)
{
- if (class(phy) != "phylo")
- stop('object "phy" is not of class "phylo"')
+ if (!inherits(phy, "phylo"))
+ stop('object "phy" is not of class "phylo"')
if (internal.only) return(phy$Nnode)
phy$Nnode + length(phy$tip.label)
}
Nedge <- function(phy)
{
- if (class(phy) != "phylo")
- stop('object "phy" is not of class "phylo"')
+ if (!inherits(phy, "phylo"))
+ stop('object "phy" is not of class "phylo"')
dim(phy$edge)[1]
}
"[.multiPhylo" <- function(x, i)
{
+ oc <- oldClass(x)
class(x) <- NULL
structure(x[i], TipLabel = attr(x, "TipLabel"),
- class = "multiPhylo")
+ class = oc)
}
str.multiPhylo <- function(object, ...)