o mltt.plot(, backward = FALSE) did not set the x-axis correctly.
+ o A bug was introduced in prop.clades() with ape 3.0.
+
+ o mantel.test() printed a useless warning message.
+
+ o plot.phylo(, direction = "downward") ignored 'y.lim'.
+
+ o is.monophyletic() did not work correctly if 'tips' was not stored
+ as integers
+
CHANGES IN APE VERSION 3.0-1