various bug fixes

[ape.git] / NEWS

diff --git a/NEWS b/NEWS
index de2da102a4fb09c042fc641ee32726b0accbf29d..acbbbf932f832355f063bc1a16310cf884d8b061 100644 (file)
--- a/NEWS
+++ b/NEWS
@@ -17,14 +17,27 @@ BUG FIXES
 
     o mltt.plot(, backward = FALSE) did not set the x-axis correctly.
 
-    o A bug was introduced in prop.clades() with ape 3.0.
+    o A bug was introduced in prop.clades() with ape 3.0. The help page
+      has been clarified relative to the use of the 'rooted' option.
 
     o mantel.test() printed a useless warning message.
 
     o plot.phylo(, direction = "downward") ignored 'y.lim'.
 
     o is.monophyletic() did not work correctly if 'tips' was not stored
-      as integers
+      as integers.
+
+    o prop.part() could make R crash if the first tree had many
+      multichotomies.
+
+    o njs(), bionjs(), and mvrs() now return an error if 'fs < 1'.
+
+
+OTHER CHANGES
+
+    o The DESCRIPTION file has been updated.
+
+    o The option 'original.data' of write.nexus() has been removed.