NEW FEATURES
- o The new function ewLasso whether tests an incomplete set of
+ o The new function ewLasso tests whether an incomplete set of
distances uniquely determines the edge weights of a given
unrooted topology using the 'Lasso' method by Dress et
al. (2012, J. Math. Biol. 65:77).
indicating that no test of significance is computed between a
distance matrix and itself.
+ o rtree(n, rooted = FALSE) returned trees with an 'edge' matrix
+ stored as doubles instead of integers for n > 4.
+
OTHER CHANGES
o ace() has a new default for its option 'method': this is "REML"
for continuous characters and "ML" for discrete ones.
- o ape now imports the package expm so this one must be installed.
+ o ape does not import gee anymore so the latter doesn't need to
+ be installed.